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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25049320_25050748_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25049320 - 25050748
Intron Length:
1429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TATCCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TAGAAATTAAAA
Flanking Amino Acid:
TMIVLYATYDDGICKTSDCI
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
82.7
0.74
0.7
81.3
30.3
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
46.8
-0.2
1.9
57.55
40.7

Associated Gene:

Gene:
MME
Ensembl Gene ID:
ENSAPLG00000013114
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013789
25015437 - 25050998
35562