Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25110463_25111507_F

Intron Information:

Intron Rank:

131923

Intron Class:

major

Intron Phase:

Intron Coordinates:

25110463 - 25111507

Intron Length:

1045

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAACTT

5'SS Class:

strong_major

3'SS Sequence:

CTTCTTCTAATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGAAAT

U12 Branch Point Sequence:

CTTCTTCTAATA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

77.9

36.7

Major BPS

59.4

0.23

1.2

65.3

38.6

Major PPT

76.6

0.6

0.8

73.6

Minor 5ss

37.2

-1.4

3.4

56.5

47.6

Minor BPS

52.1

0.06

1.6

64.52

36.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020815

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019331

25107243 - 25111620

4378