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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25133871_25134879_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25133871 - 25134879
Intron Length:
1009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATTAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TACATTTCAAAA
Flanking Amino Acid:
TKVILWLPMMIQMVVQHITG
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
79.1
30.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
86.9
0.83
0.7
84.6
30.4
Minor 5ss
41.4
-1
3
54.6
45
Minor BPS
47
-0.2
1.6
54.32
38

Associated Gene:

Gene:
GPR149
Ensembl Gene ID:
ENSAPLG00000013026
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013564
25132902 - 25153736
20835