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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25136904_25153163_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25136904 - 25153163
Intron Length:
16260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
TTAGCATTAGAT
Flanking Amino Acid:
RSRSERAPRQRSGGALAIPL
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
93.6
0.98
0.6
92.4
17.8
Minor 5ss
32.6
-2
3.1
43
44.2
Minor BPS
48.7
-0
2
71.73
44.4

Associated Gene:

Gene:
GPR149
Ensembl Gene ID:
ENSAPLG00000013026
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013564
25132902 - 25153736
20835