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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25157919_25158603_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25157919 - 25158603
Intron Length:
685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
GCCATTATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTGCCATTATT
Flanking Amino Acid:
AMSWWSGDEDGNTPEQPAKV
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
76.9
38.6
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
73.5
0.53
0.9
69.5
40.4
Minor 5ss
36.4
-1.5
3.3
43.8
43.8
Minor BPS
55.6
0.26
2
80.98
40.8

Associated Gene:

Gene:
DHX36
Ensembl Gene ID:
ENSAPLG00000012597
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013164
25157470 - 25176530
19061