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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25162411_25162545_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25162411 - 25162545
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
AAATGTTTAATT
Flanking Amino Acid:
GIVLQWLQSDKHLSSISHVV
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
86.1
0.81
0.8
84.1
30.8
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
59.5
0.38
1.7
72.19
39

Associated Gene:

Gene:
DHX36
Ensembl Gene ID:
ENSAPLG00000012597
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013164
25157470 - 25176530
19061