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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25162957_25163457_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25162957 - 25163457
Intron Length:
501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTAACTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTCTATTTAACT
Flanking Amino Acid:
YLLEDVIEKLRYMPENTDRR
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
71.9
0.49
1.1
71.4
38.3
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
75.9
0.89
1.4
88.66
36.3

Associated Gene:

Gene:
DHX36
Ensembl Gene ID:
ENSAPLG00000012597
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013164
25157470 - 25176530
19061