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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25166406_25167445_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25166406 - 25167445
Intron Length:
1040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTAATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTGATTTTAATT
Flanking Amino Acid:
LLMSQVMFKSDRFIIIPLHS
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
88.2
0.86
0.8
85.7
33.4
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
62.4
0.47
1.3
71.31
40.8

Associated Gene:

Gene:
DHX36
Ensembl Gene ID:
ENSAPLG00000012597
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013164
25157470 - 25176530
19061