Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25167502_25167616_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

25167502 - 25167616

Intron Length:

115

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGCTTG

5'SS Class:

weak_major

3'SS Sequence:

TGGATAATTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATAAAT

U12 Branch Point Sequence:

AAACATATAAAT

Flanking Amino Acid:

SLMPTVNQTQVFKKTPPGVR

Intron Amino Acid Position:

517

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

71.4

41.2

Major BPS

74.5

0.61

79.6

29.1

Major PPT

67.5

0.39

1.1

58.9

45.2

Minor 5ss

62.5

0.42

2.3

72.7

44.5

Minor BPS

44.1

-0.3

1.7

58.03

37.4

Associated Gene:

Gene:

DHX36

Ensembl Gene ID:

ENSAPLG00000012597

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013164

25157470 - 25176530

19061