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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25172079_25172179_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25172079 - 25172179
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATCC
5'SS Class:
major
3'SS Sequence:
TTATTTCCTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CAATTTTTATTT
Flanking Amino Acid:
EYFLSSNTLQMLHNMKGQFA
Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
69.5
36.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.2
0.72
0.7
77.7
31
Minor 5ss
44.7
-0.6
2.8
60.7
43.8
Minor BPS
52.6
0.16
1.5
64.83
40.5

Associated Gene:

Gene:
DHX36
Ensembl Gene ID:
ENSAPLG00000012597
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013164
25157470 - 25176530
19061