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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25173920_25174906_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25173920 - 25174906
Intron Length:
987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTCCAACAAAC
Flanking Amino Acid:
SPARIAQLVKNLRQELDDLL
Intron Amino Acid Position:
929

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1.1
87.1
30
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
89.6
0.89
0.7
85
29.8
Minor 5ss
44.9
-0.6
2.6
60
44.4
Minor BPS
43.3
-0.5
2
59.1
38.5

Associated Gene:

Gene:
DHX36
Ensembl Gene ID:
ENSAPLG00000012597
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013164
25157470 - 25176530
19061