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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25180187_25180637_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25180187 - 25180637
Intron Length:
451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
TTTTCTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
AATATTGTAATT
Flanking Amino Acid:
DRDGQKTDRTTLTQVEIIRT
Intron Amino Acid Position:
762

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
66.9
40
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
87.5
0.84
0.7
81.1
30.9
Minor 5ss
41.8
-0.9
2.8
49.2
41.2
Minor BPS
48.6
-0
2
67.4
37.9

Associated Gene:

Gene:
ARHGEF26
Ensembl Gene ID:
ENSAPLG00000012467
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012994
25178638 - 25225954
47317