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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25180706_25185270_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25180706 - 25185270
Intron Length:
4565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTGCTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
GGAAACTGAATT
Flanking Amino Acid:
KVEMLLGTDTQSERARWITV
Intron Amino Acid Position:
739

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
82.1
0.72
0.9
76.5
37.5
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
48.3
-0
1.7
61.97
41

Associated Gene:

Gene:
ARHGEF26
Ensembl Gene ID:
ENSAPLG00000012467
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012994
25178638 - 25225954
47317