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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25197121_25198178_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25197121 - 25198178
Intron Length:
1058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGAACA
5'SS Class:
major
3'SS Sequence:
TATTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTCCTCTGAAGT
Flanking Amino Acid:
RVTRLPLLMDTICQKTPKDS
Intron Amino Acid Position:
563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
72.5
31.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.9
0.85
0.8
86
32.7
Minor 5ss
30.7
-2.2
2.9
37.5
39.7
Minor BPS
49.5
0.04
1.8
66.64
43.8

Associated Gene:

Gene:
ARHGEF26
Ensembl Gene ID:
ENSAPLG00000012467
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012994
25178638 - 25225954
47317