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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25198309_25198798_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25198309 - 25198798
Intron Length:
490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGAGCT
5'SS Class:
major
3'SS Sequence:
TTTTTCCTACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTCTGTTTAATT
Flanking Amino Acid:
VYQQRTLQKLLATNPAFKEV
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
65.9
38.1
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
84.6
0.78
0.8
78.9
34.4
Minor 5ss
36
-1.6
3.6
58.7
45.3
Minor BPS
67.9
0.64
1.7
82.98
39.3

Associated Gene:

Gene:
ARHGEF26
Ensembl Gene ID:
ENSAPLG00000012467
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012994
25178638 - 25225954
47317