About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25212802_25216430_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25212802 - 25216430
Intron Length:
3629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTTTC
5'SS Class:
major
3'SS Sequence:
TTCCACTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTCAA
U12 Branch Point Sequence:
TCAATAGTAAGT
Flanking Amino Acid:
ISQEERKRQEAIFEVISSEH
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.3
35.6
Major BPS
67.8
0.44
1.1
69.6
37.5
Major PPT
82.4
0.73
0.8
76.5
31.6
Minor 5ss
43.8
-0.7
3
61.8
43
Minor BPS
40.5
-0.6
2.3
57.88
44.8

Associated Gene:

Gene:
ARHGEF26
Ensembl Gene ID:
ENSAPLG00000012467
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012994
25178638 - 25225954
47317