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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25216488_25221988_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25216488 - 25221988
Intron Length:
5501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTATTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTCTACAAAA
Flanking Amino Acid:
LRSTWSQLSVVKKNGLLETI
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
81.7
31.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
89
0.88
0.7
89.1
27.6
Minor 5ss
38.8
-1.3
3
57.3
41.2
Minor BPS
54.5
0.14
1.9
74.18
37

Associated Gene:

Gene:
ARHGEF26
Ensembl Gene ID:
ENSAPLG00000012467
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012994
25178638 - 25225954
47317