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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25299121_25300040_R

Intron Information:

Intron Rank:
142051
Intron Class:
major
Intron Phase:
Intron Coordinates:
25299121 - 25300040
Intron Length:
920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TGACCCTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATATGTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
81.4
32.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
64.3
0.32
0.8
57.9
33
Minor 5ss
34.6
-1.7
3
44.4
43.7
Minor BPS
64.5
0.53
1.7
78.82
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023755
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041420
25298560 - 25303612
5053