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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2530181_2535417_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2530181 - 2535417
Intron Length:
5237

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTG|GCCGTCGCC
5'SS Class:
weak_major
3'SS Sequence:
TCTTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAG
U12 Branch Point Sequence:
ATGACTGGAACG
Flanking Amino Acid:
MGKRQAPARRVVWGECNHSF
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.2
0.03
1.3
53.7
38.7
Major BPS
58.6
0.21
1.5
57.1
41.8
Major PPT
90.3
0.91
0.6
88.5
21.1
Minor 5ss
21.5
-3.3
4
30.5
37.7
Minor BPS
44.3
-0.5
2.1
51.16
43.2

Associated Gene:

Gene:
RNF7
Ensembl Gene ID:
ENSAPLG00000006609
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006849
2530062 - 2535622
5561