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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25302011_25303095_R

Intron Information:

Intron Rank:
142053
Intron Class:
major
Intron Phase:
Intron Coordinates:
25302011 - 25303095
Intron Length:
1085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGATTT
5'SS Class:
strong_major
3'SS Sequence:
TGACTTCCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
ATGGCTTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
77.6
33.4
Major BPS
84.6
0.86
1
74
41.2
Major PPT
67.6
0.4
0.8
61.9
34.7
Minor 5ss
37
-1.5
3.5
55.2
49
Minor BPS
65.9
0.58
1.4
76.71
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023755
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041420
25298560 - 25303612
5053