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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25316922_25320437_R

Intron Information:

Intron Rank:
136941
Intron Class:
major
Intron Phase:
Intron Coordinates:
25316922 - 25320437
Intron Length:
3516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTATCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CATCCTTGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
91
0.92
0.7
85.4
34.3
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
63.3
0.5
1.5
75.68
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021163
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030885
25315223 - 25320646
5424