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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25432669_25434271_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
25432669 - 25434271
Intron Length:
1603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TCTTCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
AATGATTTATCT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
68
0.45
1
57.8
39
Major PPT
88.4
0.86
0.7
80.6
31.4
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
49.3
0.02
1.8
68.35
42.4

Associated Gene:

Gene:
MBNL1
Ensembl Gene ID:
ENSAPLG00000012049
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021162
25431384 - 25445991
14608
ENSAPLT00000012600
25431384 - 25445991
14608