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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25435588_25437647_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25435588 - 25437647
Intron Length:
2060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGCTAA
5'SS Class:
major
3'SS Sequence:
TATGTCTCGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TATGTCTCGACA
Flanking Amino Acid:
PFAATATANQHYP*
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.2
65
37.2
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
70.3
0.46
1
65.6
40.8
Minor 5ss
45.6
-0.5
2.5
56
48.2
Minor BPS
54.8
0.14
1.7
66.97
39.5

Associated Gene:

Gene:
MBNL1
Ensembl Gene ID:
ENSAPLG00000012049
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030432
25434272 - 25445991
11720