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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25438473_25443451_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
25438473 - 25443451
Intron Length:
4979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GCATGATGGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
CAATGCATGATG
Flanking Amino Acid:
LQQHTAFLPPGSILCMTPAT
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
52
0.05
1.2
46.5
44.8
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
43
-0.6
2
44.66
41.7

Associated Gene:

Gene:
MBNL1
Ensembl Gene ID:
ENSAPLG00000012049
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012600
25431384 - 25445991
14608
ENSAPLT00000030432
25434272 - 25445991
11720
ENSAPLT00000021162
25431384 - 25445991
14608