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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25595251_25596552_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25595251 - 25596552
Intron Length:
1302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATCAACA
Flanking Amino Acid:
KAFTDLHSLQVLKMSYNKVS
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
100
1.24
0.5
100
0
Major PPT
78.9
0.65
0.9
74.8
33.8
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
70.6
0.64
1.8
85.44
33.4

Associated Gene:

Gene:
IGSF10
Ensembl Gene ID:
ENSAPLG00000011740
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012222
25593119 - 25606036
12918