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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25596944_25598042_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25596944 - 25598042
Intron Length:
1099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGTAT
U12 Branch Point Sequence:
TGTATCACAAAA
Flanking Amino Acid:
WFAEWSRQRPDVIKCKKDRS
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.1
37.5
Major BPS
62.7
0.32
1.4
63.4
44
Major PPT
91.5
0.93
0.6
89.8
18.5
Minor 5ss
37.8
-1.4
3
47.1
48.3
Minor BPS
45.6
-0.3
1.9
59.73
39.2

Associated Gene:

Gene:
IGSF10
Ensembl Gene ID:
ENSAPLG00000011740
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012222
25593119 - 25606036
12918