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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25615167_25616182_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25615167 - 25616182
Intron Length:
1016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGGTCC
5'SS Class:
major
3'SS Sequence:
ATTTTTCAACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTCAACC
Flanking Amino Acid:
AYIQPLAGTQRLSHQPLQPN
Intron Amino Acid Position:
1853

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
63.9
37
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.2
0.54
1
68.3
41.9
Minor 5ss
33
-1.9
3.2
43.1
44.2
Minor BPS
67.3
0.52
1.5
75.36
34.8

Associated Gene:

Gene:
MED12L
Ensembl Gene ID:
ENSAPLG00000010557
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022605
25609286 - 25731029
121744
ENSAPLT00000011035
25609286 - 25731029
121744
ENSAPLT00000036429
25609286 - 25731029
121744