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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25625633_25626664_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25625633 - 25626664
Intron Length:
1032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTATTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGAAT
U12 Branch Point Sequence:
TTCACTTTTACT
Flanking Amino Acid:
RKSKSSSRTDEYPQNNLYRV
Intron Amino Acid Position:
1623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
66.8
0.42
1.4
75.9
36.3
Major PPT
69.7
0.44
1.1
72.4
41.9
Minor 5ss
36.8
-1.5
3.4
53.8
43.7
Minor BPS
64.4
0.54
1.7
80.66
41.2

Associated Gene:

Gene:
MED12L
Ensembl Gene ID:
ENSAPLG00000010557
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022605
25609286 - 25731029
121744
ENSAPLT00000011035
25609286 - 25731029
121744
ENSAPLT00000036429
25609286 - 25731029
121744