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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25628580_25629133_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25628580 - 25629133
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTC
Flanking Amino Acid:
AYMNLVKKLKKELGDKRSES
Intron Amino Acid Position:
1448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
88.1
25.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.6
0.69
0.8
78.7
35
Minor 5ss
40.3
-1.1
3.4
58.5
40.4
Minor BPS
61.2
0.33
1.7
74.93
36

Associated Gene:

Gene:
MED12L
Ensembl Gene ID:
ENSAPLG00000010557
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022605
25609286 - 25731029
121744
ENSAPLT00000011035
25609286 - 25731029
121744
ENSAPLT00000036429
25609286 - 25731029
121744