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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25633307_25635900_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25633307 - 25635900
Intron Length:
2594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGACCT
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTCTTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CTTCTCTTAAAG
Flanking Amino Acid:
KKERDRQKQKSMSLLSQQPF
Intron Amino Acid Position:
1298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
70.8
39.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
71.2
0.48
1
70.7
33.9
Minor 5ss
40.7
-1
3.1
57.7
46.5
Minor BPS
63.4
0.28
1.5
65.72
41.9

Associated Gene:

Gene:
MED12L
Ensembl Gene ID:
ENSAPLG00000010557
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036429
25609286 - 25731029
121744
ENSAPLT00000022605
25609286 - 25731029
121744
ENSAPLT00000011035
25609286 - 25731029
121744