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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25637924_25638501_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25637924 - 25638501
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGGTTACTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATCTTCTGAATC
Flanking Amino Acid:
RYVLRTICQQEWVGEHCLKE
Intron Amino Acid Position:
1093

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
34.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
77
0.61
0.9
69.7
40.7
Minor 5ss
42
-0.9
2.9
59.3
45.1
Minor BPS
63.9
0.42
1.4
69.02
36.7

Associated Gene:

Gene:
MED12L
Ensembl Gene ID:
ENSAPLG00000010557
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036429
25609286 - 25731029
121744
ENSAPLT00000022605
25609286 - 25731029
121744
ENSAPLT00000011035
25609286 - 25731029
121744