Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25647032_25648130_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

25647032 - 25648130

Intron Length:

1099

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTGGA

5'SS Class:

strong_major

3'SS Sequence:

TTTTGGTCCTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAAATAC

U12 Branch Point Sequence:

TTTTGGGCAACT

Flanking Amino Acid:

HLRSKFGDLFSSACSKVKQT

Intron Amino Acid Position:

790

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

68.5

38.7

Major BPS

46.4

-0.2

0.9

39.1

28.5

Major PPT

79.8

0.67

0.9

77.2

37.1

Minor 5ss

25.2

-2.8

3.2

31.3

42.9

Minor BPS

42.4

-0.5

2.9

75.75

46.8

Associated Gene:

Gene:

MED12L

Ensembl Gene ID:

ENSAPLG00000010557

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036429

25609286 - 25731029

121744

ENSAPLT00000022605

25609286 - 25731029

121744

ENSAPLT00000011035

25609286 - 25731029

121744