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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25649630_25650771_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25649630 - 25650771
Intron Length:
1142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTCCC
5'SS Class:
major
3'SS Sequence:
TTTATTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTATTTTCACA
Flanking Amino Acid:
YFDQHQVTSQISSNVLEQIT
Intron Amino Acid Position:
644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
62.8
41.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
87.9
0.85
0.7
83.6
31.3
Minor 5ss
34.5
-1.8
3
46.1
41.9
Minor BPS
60.4
0.32
1.8
75.15
36.6

Associated Gene:

Gene:
MED12L
Ensembl Gene ID:
ENSAPLG00000010557
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036429
25609286 - 25731029
121744
ENSAPLT00000022605
25609286 - 25731029
121744
ENSAPLT00000011035
25609286 - 25731029
121744