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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25704847_25707166_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25704847 - 25707166
Intron Length:
2320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTACATGACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTTATCTTAAAT
Flanking Amino Acid:
YSKDHDMKMEIFSPMPGESC
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
60.8
0.24
1
58.9
41.6
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
69.1
0.68
1.5
81.61
39.7

Associated Gene:

Gene:
MED12L
Ensembl Gene ID:
ENSAPLG00000010557
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011035
25609286 - 25731029
121744
ENSAPLT00000036429
25609286 - 25731029
121744