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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25705973_25707166_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
25705973 - 25707166
Intron Length:
1194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CGACAATTATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TCTCCGACAATT
Flanking Amino Acid:
YSKDHDMKMEDHSIMEHMGI
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
55.2
0.12
1
52.2
41.3
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
43.6
-0.4
2.4
66.59
44.2

Associated Gene:

Gene:
MED12L
Ensembl Gene ID:
ENSAPLG00000010557
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022605
25609286 - 25731029
121744