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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25709617_25710760_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25709617 - 25710760
Intron Length:
1144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTAACTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
ATGTATTTAACT
Flanking Amino Acid:
EKRQAEIEAERCGESEVLDE
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
27.2
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
75.5
0.57
1
69.7
41.1
Minor 5ss
44.5
-0.6
2.8
60
38.4
Minor BPS
71.5
0.75
1.4
83.28
37.7

Associated Gene:

Gene:
MED12L
Ensembl Gene ID:
ENSAPLG00000010557
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036429
25609286 - 25731029
121744
ENSAPLT00000022605
25609286 - 25731029
121744
ENSAPLT00000011035
25609286 - 25731029
121744