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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25765607_25775770_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25765607 - 25775770
Intron Length:
10164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
GGTCTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
GTTTCCTGATGC
Flanking Amino Acid:
VASAVLFPCKYATTGCSLTL
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
81.6
0.71
0.9
72.8
42.2
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
51.5
0.03
2
68.17
43

Associated Gene:

Gene:
SIAH2
Ensembl Gene ID:
ENSAPLG00000026842
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042490
25765262 - 25777286
12025