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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25799919_25800203_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25799919 - 25800203
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGAACT
5'SS Class:
major
3'SS Sequence:
TTTTTTGTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TCTGTCTTATCT
Flanking Amino Acid:
TTPMYSGQTSLEKIQKETAL
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.1
67.2
37.9
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
87.2
0.84
0.8
81.2
36.5
Minor 5ss
32.7
-2
3
42.9
43.6
Minor BPS
63
0.49
1.7
78.81
43.9

Associated Gene:

Gene:
EIF2A
Ensembl Gene ID:
ENSAPLG00000010076
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024940
25799790 - 25813607
13818