About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25800297_25800550_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25800297 - 25800550
Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTGA
5'SS Class:
major
3'SS Sequence:
TGATTCATCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
ATCCATTTGATT
Flanking Amino Acid:
AAGKQLEKNQGHVCCYATPV
Intron Amino Acid Position:
527

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
59.6
41.8
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
68.3
0.41
0.9
62.5
38.3
Minor 5ss
35.1
-1.7
3.4
47.8
47.7
Minor BPS
51.8
0.14
1.5
67.32
37.7

Associated Gene:

Gene:
EIF2A
Ensembl Gene ID:
ENSAPLG00000010076
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024940
25799790 - 25813607
13818