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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25800617_25801672_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25800617 - 25801672
Intron Length:
1056

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAC
U12 Branch Point Sequence:
TTTATTTTCACA
Flanking Amino Acid:
TDKKIKNLKKKLKAIEQLKE
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.3
1.05
0.8
77.9
33.3
Major BPS
65
0.37
1
73
31.6
Major PPT
87.9
0.85
0.7
83.6
31.3
Minor 5ss
18.3
-3.7
4
29
43.5
Minor BPS
60.4
0.32
1.8
75.15
36.6

Associated Gene:

Gene:
EIF2A
Ensembl Gene ID:
ENSAPLG00000010076
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024940
25799790 - 25813607
13818
ENSAPLT00000010545
25799790 - 25813607
13818