About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25824242_25824687_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25824242 - 25824687
Intron Length:
446

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTGATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTAAATTCAATT
Flanking Amino Acid:
AIDNKIEQAMGLSYFLTFVY
Intron Amino Acid Position:
704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
65.4
0.35
1
62.8
43.4
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
50.8
0.1
1.7
71.06
39.8

Associated Gene:

Gene:
TSC22D2
Ensembl Gene ID:
ENSAPLG00000028238
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033390
25822781 - 25847109
24329