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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25824740_25845055_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25824740 - 25845055
Intron Length:
20316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTGTATTTACA
Flanking Amino Acid:
ISIPVDGDEDSASGASVVAI
Intron Amino Acid Position:
662

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
80.7
31.7
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
86.7
0.82
0.8
80.7
35.9
Minor 5ss
42.5
-0.8
3.5
64.3
47.2
Minor BPS
52.2
0.06
2
71.92
39.8

Associated Gene:

Gene:
TSC22D2
Ensembl Gene ID:
ENSAPLG00000028238
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023393
25822781 - 25847109
24329