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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25949339_25951021_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25949339 - 25951021
Intron Length:
1683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTTTAAAACT
Flanking Amino Acid:
YNVAVGRAGRVLVFVMGKEG
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
67.1
44.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
35.7
-1.6
3.3
46.8
48.5
Minor BPS
51.9
0.14
1.9
75.66
41.6

Associated Gene:

Gene:
PFN2
Ensembl Gene ID:
ENSAPLG00000030462
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030300
25949161 - 25951119
1959