About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25963507_25967331_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25963507 - 25967331
Intron Length:
3825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CATCTGTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
CATTGTCTAACA
Flanking Amino Acid:
ICLILIVIFMITKFVQDRHR
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
78.2
0.63
0.9
68.8
41.6
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
49.4
-0
2.1
64.81
41.8

Associated Gene:

Gene:
RNF13
Ensembl Gene ID:
ENSAPLG00000009437
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009908
25957277 - 25977473
20197