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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25971959_25973929_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
25971959 - 25973929
Intron Length:
1971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
CTTTTTTATACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTTTTCATCC
Flanking Amino Acid:
DDLISMGSNDIEILKKIDIP
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
100
1.24
0.5
100
0
Major PPT
87.9
0.85
0.8
84
29.9
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
52
0.04
1.8
66.73
39.1

Associated Gene:

Gene:
RNF13
Ensembl Gene ID:
ENSAPLG00000009437
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009908
25957277 - 25977473
20197