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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25974784_25975788_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25974784 - 25975788
Intron Length:
1005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTAT
5'SS Class:
major
3'SS Sequence:
TACTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAA
U12 Branch Point Sequence:
TATCCTGTTACT
Flanking Amino Acid:
GYRLPAEGLKGFLINSKPEN
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.6
31.1
Major BPS
58.9
0.22
1
49.8
35.1
Major PPT
83.2
0.75
0.8
80.5
36.8
Minor 5ss
48
-0.2
2.5
66.9
44.3
Minor BPS
48.8
-0
2.3
74.37
42.2

Associated Gene:

Gene:
RNF13
Ensembl Gene ID:
ENSAPLG00000009437
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009908
25957277 - 25977473
20197