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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25975870_25977349_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25975870 - 25977349
Intron Length:
1480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTATTTCTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTTCTTCGAAA
Flanking Amino Acid:
LLPVEADILAYNFENGTQTF
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
81.8
0.72
0.7
81.7
30.1
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
61
0.34
1.7
75.77
35.1

Associated Gene:

Gene:
RNF13
Ensembl Gene ID:
ENSAPLG00000009437
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009908
25957277 - 25977473
20197