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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25982591_25983786_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
25982591 - 25983786
Intron Length:
1196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
TGTTAATTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
GAATTGTTAATT
Flanking Amino Acid:
YLLTESSKLMISERDFQDSI
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
80.5
33.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
79.8
0.67
0.9
70.3
44.5
Minor 5ss
36
-1.6
3.3
45.4
43.9
Minor BPS
54.2
0.21
2
70.34
40.7

Associated Gene:

Gene:
COMMD2
Ensembl Gene ID:
ENSAPLG00000029213
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033279
25980439 - 25984546
4108