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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_25995170_26031357_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
25995170 - 26031357
Intron Length:
36188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGAGCA
5'SS Class:
major
3'SS Sequence:
TTTACTTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TTATCTTTACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
61.4
37.5
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
85.8
0.81
0.7
84.5
30.2
Minor 5ss
29.5
-2.4
3.5
35.7
43.1
Minor BPS
70.1
0.71
1.5
84.32
36.9

Associated Gene:

Gene:
WWTR1
Ensembl Gene ID:
ENSAPLG00000009404
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035730
25994717 - 26055588
60872