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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_26030438_26031357_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26030438 - 26031357
Intron Length:
920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATATACC
5'SS Class:
major
3'SS Sequence:
TTTACTTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TTATCTTTACTT
Flanking Amino Acid:
DGTTCKQSIASHIEKITTWQ
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
73.9
34.7
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
85.8
0.81
0.7
84.5
30.2
Minor 5ss
42.4
-0.8
2.6
55.1
42.2
Minor BPS
70.1
0.71
1.5
84.32
36.9

Associated Gene:

Gene:
WWTR1
Ensembl Gene ID:
ENSAPLG00000009404
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048197
26030397 - 26055588
25192